This link has one report about one interesting software. The three-dimensional interface organizes computer contents by their relationships rather than their physical position on a hard drive. http://www.sciencemag.org/cgi/content/full/301/5639/1476
If you have Linux, you can download it from here http://gd.tuwien.ac.at/opsys/linux/sf/subcat/in/innolab/3dfm-1.0.tar.gz
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